Abstract: Taking the wind-water joint commissioning of a FAO (fully automatic operation) rail transit line station in Shanghai as study case, the commissioning ideas are explored and the relevant equipment in the commissioning process are sorted. The wind-water joint commissioning is divided into four main stages, and the problems in the commissioning process of each stage are summarized in depth and solutions are proposed. Reasonable suggestions are put forward to construction management, design unit, operator and integrator about the wind-water joint commissioning.